Simple Project List Software Map

392 projects in result set
Última Atualização: 2009-04-17 12:44


R is a language and environment for statistical computing and graphics. It is similar to S, which was developed at Bell Laboratories by John Chambers et al. It provides a wide variety of statistical and graphical techniques (linear and nonlinear modelling, statistical tests, time series analysis, classification, clustering, etc.). R is designed as a true computer language with control-flow constructions for iteration and alternation, and it allows users to add additional functionality by defining new functions. For computationally intensive tasks, Fortran and C code can be linked and called at run time.

Última Atualização: 2014-06-05 14:28


Wandora is a general purpose data extraction, management, and publishing application based on Topic Maps and Java. Wandora has a graphical user interface, layered presentation of knowledge, several data storage options, rich data extraction, import and export capabilities, and an embedded HTTP server that enables dynamic publication of Topic Maps. Wandora is well suited for rapid ontology construction and knowledge mashups.

Última Atualização: 2020-10-10 03:43


このパッケージには、BBMap には、短いリードのアライナ、様々 な他 bioinformatic ツールが含まれます。それは純粋な Java で書かれて任意のプラットフォーム上で実行することができ、持たない依存関係よりもインストールされている Java (Java 7 向けにコンパイルされたが、再コンパイルして実行できる Java 6 に)。すべてのツールは、効率的かつマルチ スレッドです。BBMap: 短い DNA と RNA seq データのアライナを読みます。足場の何百万と任意の大きさのゲノムを扱うことができます。イルミナ, !PacBio, 454、およびその他の読み取りを処理します。非常に高い感度とエラーと大多数の indels の耐性。BBNorm: 造営尺度に基づく誤り訂正と正規化ツールです。ターゲット パーセント id を共有して重複している、または含まれるサブシーケンスを重複除外: アセンブリ簡素化されます。フォーマット: 再フォーマットを読み取ります fasta と fastq、スカーフ、fasta + qual、サム。インターリーブ/ペア;ASCII 33/64、以上 500 MB/s. BBDuk で: フィルターまたはトリム アーティファクト/汚染ファイルに造営尺度試合で読み取ります。共同ゲノム研究所によって使用されます。

(Machine Translation)
Desenvolvimento Estado: 5 - Production/Stable
Destinado Audiência: Science/Research
Linguagem Natural: English
Sistema Operacional: BSD, SunOS/Solaris, Windows, Windows XP
Linguagem de Programação: Java
Interface de Usuário: Console/Terminal
Última Atualização: 2012-01-27 08:23


このプロジェクトは、実装の仮想共同作業環境 (VCE) 医学の臨床応用の 3 D モデリングをサポートします。システムは 3 層クライアント/サーバ ・ アーキテクチャに基づいています。

(Machine Translation)
Database Environment: MySQL
Desenvolvimento Estado: 4 - Beta
Destinado Audiência: Healthcare Industry
Linguagem de Programação: C++, PHP
Interface de Usuário: Qt
Última Atualização: 2009-03-11 20:55


PLOTICUS is a command line utility for creating bar, line, pie, boxplot, scatterplot, sweep, heatmap, vector, timeline, Venn diagrams, and other types of charts and plots. ploticus is good for automated or just-in-time graph generation. It handles date, time, and categorical data nicely, and has some basic statistical capabilities. It can output to GIF, PNG, SVG, SWF, JPEG, PostScript, EPS, and X11. You can use convenient preset options or create complex scripts with rich and detailed color and style operations.

Última Atualização: 2007-04-25 03:19

Engauge Digitizer

Engauge Digitizer is digitizing software that converts an image showing a graph or map into numbers. The image file can come from a scanner, digital camera, or screenshot. The numbers can be read on the screen, and written or copied to a spreadsheet. Highlights for beginners include an intuitive interface and extensive context-sensitive documentation. Highlights for experts include compensation for image distortion, cartesian and polar coordinates, linear and logarithmic coordinates, automatic scanning, graphical previews, and browser help.

Última Atualização: 2014-04-02 15:30


openModeller is a C++ framework providing tools and an API for ecological niche modeling using a variety of algorithms. It can be used to predict species potential distribution based on a set of georeferenced occurrence points and a set of environmental layers.

(Machine Translation)
Última Atualização: 2014-05-21 18:22


MCL-edge is an integrated command-line driven workbench for large scale network analysis. It includes programs for the computation of shortest paths, diameter, clustering coefficient, betweenness centrality, and network shuffles. A module for loading and analyzing gene expression data as a network is provided. The MCL algorithm is a fast and highly scalable cluster algorithm for networks based on stochastic flow. The flow process employed by the algorithm is mathematically sound and intrinsically tied to cluster structure, which is revealed as the imprint left by the process. The threaded implementation has handled networks with millions of nodes within hours and is widely used in the fields of bioinformatics, graph clustering, and network analysis.

(Machine Translation)
Última Atualização: 2010-12-07 21:51


The Biochemical ALgorithms Library (BALL) is a
framework for rapid application development in
molecular modeling and structural bioinformatics.
BALL provides an extensive set of data structures
as well as classes for molecular mechanics,
advanced solvation methods, comparison and
analysis of protein structures, file
import/export, NMR shift prediction, and
visualization. Its extensibility results from an
object-oriented and generic programming approach.

(Machine Translation)
Última Atualização: 2014-02-17 20:04


SHOGUN is a machine learning toolbox whose focus is on large scale kernel methods and especially on Support Vector Machines (SVM). It provides a generic SVM object interfacing to several different SVM implementations, all making use of the same underlying, efficient kernel implementations. Apart from SVMs and regression, SHOGUN also features a number of linear methods like Linear Discriminant Analysis (LDA), Linear Programming Machine (LPM), (Kernel) Perceptrons, and algorithms to train hidden Markov models. SHOGUN can be used from within C++, Matlab, R, Octave, and Python.

Última Atualização: 2005-04-29 13:55


The libmba package is a collection of mostly independent C modules potentially useful to any project. There are the usual ADTs including a linkedlist, hashmap, pool, stack, and varray, a flexible memory allocator, CSV parser, path canonicalization routine, I18N text abstraction, configuration file module, portable semaphores, condition variables, and more. The code is designed so that individual modules can be integrated into existing codebases rather than requiring the user to commit to the entire library. The code has no typedefs, few comments, and extensive man pages and HTML documentation.

Última Atualização: 2008-09-12 04:33


Redet is a tool for developing and executing regular expressions using any of more than 50 search programs, editors, and programming languages, intended both for developing regular expressions for use elsewhere and as a search tool in its own right. For each program in each locale, a palette showing the available constructs is provided. The properties of each program are determined by runtime tests, which guarantees that they will be correct for the program version and locale. Additional features include persistent history, extensive help, a variety of character entry tools, and the ability to change locale while running. Redet is highly configurable and fully supports Unicode.

Última Atualização: 2006-07-30 05:20


PhpLabware is a database system with features similar to Filemaker and Access, but is completely Web-based. Relational
databases can be defined through the Web interface and extended with PHP plugin code. User and group access is regulated at the record level. It was written by and for life sciences research scientists, but should be generally useful as a Web-based front end to SQL databases.

(Machine Translation)
Última Atualização: 2004-11-01 22:48


AntFlow builds upon Apache Ant to provide a new
approach to simplifying system automation that
uses pipelines of hot folders chained together to
perform a given task. Using XML, it associates an
automated task such as data transfer, encryption,
or XML processing with a directory on the local
system. Whenever a file is copied or written into
the hot folder, the associated task is executed
and the file is moved to the next hot folder in
the pipeline for further processing.

(Machine Translation)
Última Atualização: 2004-11-02 17:10


Cactus is a general, modular, parallel environment for solving systems of partial differential

equations. The code has been developed over many years by a large international collaboration of numerical relativity and computational science research groups and can be used to provide a portable platform for solving any system of partial differential equations.