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Projeto Descrição

This package includes BBMap, a short read aligner, as well as various other bioinformatic tools. It is written in pure Java, can run on any platform, and has no dependencies other than Java being installed (compiled for Java 6 and 7). All tools are efficient and multithreaded.

BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and tolerant of errors and numerous large indels. Very fast.

BBNorm: Kmer-based error-correction and normalization tool.

Dedupe: Simplifies assemblies by removing duplicate or contained subsequences that share a target percent identity.

Reformat: Reformats reads between fasta/fastq/scarf/fasta+qual/sam, interleaved/paired, and ASCII-33/64, at over 500 MB/s.

BBDuk: Filters or trims reads with kmer matches to an artifact/contaminant file.

...and more!

System Requirements

Sistema Operacional: BSD, SunOS/Solaris, Windows, Windows XP

Download Package list

Últimos 5 Arquivos
Nome Tamanho Data Download count
BBMap_38.96.tar.gz 10.4 MB 2022-02-25 13:14 4
BBMap_38.95.tar.gz 10.4 MB 2022-01-12 08:49 1
BBMap_38.94.tar.gz 10.4 MB 2021-10-01 07:31 0
BBMap_38.93.tar.gz 10.4 MB 2021-09-22 03:53 0
BBMap_38.92.tar.gz 10.4 MB 2021-08-12 07:42 0
Todos os Arquivos
BBMap_38.96.tar.gz10.4 MB2022-02-25 13:144
BBMap_38.95.tar.gz10.4 MB2022-01-12 08:491
BBMap_38.94.tar.gz10.4 MB2021-10-01 07:310
BBMap_38.93.tar.gz10.4 MB2021-09-22 03:530
BBMap_38.92.tar.gz10.4 MB2021-08-12 07:420
BBMap_38.91.tar.gz10.4 MB2021-07-19 15:220
BBMap_38.90.tar.gz10.3 MB2021-02-04 05:245
BBMap_38.89.tar.gz10.3 MB2021-01-29 08:240
BBMap_38.88.tar.gz10.3 MB2021-01-28 03:480
BBMap_38.87.tar.gz10.2 MB2020-10-10 03:432
BBMap_38.86.tar.gz10.3 MB2020-06-13 09:391
BBMap_38.84.tar.gz10.1 MB2020-05-06 02:07100
BBMap_38.83.tar.gz10.1 MB2020-05-05 05:450
BBMap_38.82.tar.gz10.1 MB2020-04-18 07:401
BBMap_38.81.tar.gz10.1 MB2020-04-09 13:560
BBMap_38.80.tar.gz10.0 MB2020-04-05 07:081
BBMap_38.79.tar.gz10.0 MB2020-02-20 08:531
BBMap_38.76.tar.gz10.0 MB2020-01-30 03:570
BBMap_38.75.tar.gz9.9 MB2020-01-08 09:080
BBMap_38.73.tar.gz13.3 MB2019-11-14 09:061
BBMap_38.72.tar.gz12.6 MB2019-11-08 07:580
BBMap_38.71.tar.gz12.5 MB2019-10-31 07:000
BBMap_38.70.tar.gz12.8 MB2019-10-25 09:072
BBMap_38.69.tar.gz12.2 MB2019-10-01 05:221
BBMap_38.68.tar.gz12.1 MB2019-09-19 09:081
BBMap_38.67.tar.gz12.1 MB2019-09-05 03:323
BBMap_38.63.tar.gz12.0 MB2019-08-21 05:063
BBMap_38.62.tar.gz11.9 MB2019-08-15 09:171
BBMap_38.61b.tar.gz11.1 MB2019-08-01 09:130
BBMap_38.60.tar.gz11.1 MB2019-07-26 08:420
BBMap_38.59.tar.gz11.1 MB2019-07-19 08:311
BBMap_38.58.tar.gz11.1 MB2019-07-17 05:330
BBMap_38.57.tar.gz11.1 MB2019-07-04 06:250
BBMap_38.56.tar.gz11.0 MB2019-06-28 06:140
BBMap_38.55.tar.gz11.0 MB2019-06-27 03:091
BBMap_38.54.tar.gz11.0 MB2019-06-25 07:550
BBMap_38.52.tar.gz10.9 MB2019-06-21 09:000
BBMap_38.51.tar.gz11.0 MB2019-06-13 07:530
BBMap_38.50b.tar.gz10.8 MB2019-05-31 06:010
BBMap_38.49.tar.gz10.8 MB2019-05-17 09:110
BBMap_38.47.tar.gz10.9 MB2019-05-15 09:100
BBMap_38.46.tar.gz10.9 MB2019-05-02 08:390
BBMap_38.45.tar.gz10.8 MB2019-04-25 08:070
BBMap_38.44.tar.gz10.8 MB2019-03-29 05:498
BBMap_38.43.tar.gz10.8 MB2019-03-22 06:210
BBMap_38.42.tar.gz10.7 MB2019-03-08 10:161
BBMap_38.41.tar.gz10.7 MB2019-02-22 07:590
BBMap_38.39.tar.gz10.8 MB2019-02-20 08:010
BBMap_38.38.tar.gz10.8 MB2019-02-14 06:420
BBMap_38.37.tar.gz10.8 MB2019-02-12 10:181
BBMap_38.36.tar.gz10.7 MB2019-02-08 05:042
BBMap_38.35.tar.gz10.9 MB2019-01-30 07:301
BBMap_38.34.tar.gz9.1 MB2018-12-20 10:253
BBMap_38.33.tar.gz9.1 MB2018-12-14 09:350
BBMap_38.32.tar.gz9.1 MB2018-12-14 09:341
BBMap_38.31.tar.gz8.5 MB2018-11-15 09:421
BBMap_38.30.tar.gz8.4 MB2018-11-09 09:010
BBMap_38.29.tar.gz8.4 MB2018-11-06 09:270
BBMap_38.26.tar.gz8.1 MB2018-10-05 09:340
BBMap_38.25.tar.gz8.1 MB2018-09-19 09:240
BBMap_38.23.tar.gz8.1 MB2018-08-30 05:420
BBMap_38.22.tar.gz8.1 MB2018-08-16 08:401
BBMap_38.21.tar.gz8.0 MB2018-08-14 04:050
BBMap_38.20.tar.gz8.0 MB2018-08-07 08:240
BBMap_38.19.tar.gz8.0 MB2018-08-02 08:051
BBMap_38.18.tar.gz8.0 MB2018-08-01 06:110
BBMap_38.16.tar.gz7.6 MB2018-07-20 06:151
BBMap_38.12.tar.gz7.5 MB2018-07-12 03:480
BBMap_38.11.tar.gz7.5 MB2018-07-04 06:310
BBMap_38.08.tar.gz7.5 MB2018-06-19 06:220
BBMap_38.07.tar.gz7.5 MB2018-06-12 09:011
BBMap_38.06.tar.gz7.4 MB2018-06-01 09:080
BBMap_38.05.tar.gz7.5 MB2018-05-25 07:131
BBMap_38.04.tar.gz7.5 MB2018-05-24 07:350
BBMap_38.03.tar.gz7.5 MB2018-05-23 09:000
BBMap_38.02.tar.gz7.4 MB2018-05-16 08:402
BBMap_38.01.tar.gz7.4 MB2018-05-11 06:341
BBMap_38.00.tar.gz7.0 MB2018-04-27 05:271
BBMap_37.99.tar.gz7.0 MB2018-04-19 02:321
BBMap_37.98.tar.gz6.9 MB2018-04-13 09:020
BBMap_37.97.tar.gz6.9 MB2018-04-12 09:230
BBMap_37.96.tar.gz7.0 MB2018-04-06 09:070
BBMap_37.95.tar.gz6.9 MB2018-03-27 08:561
BBMap_37.93.tar.gz6.7 MB2018-03-06 03:412
BBMap_37.92.tar.gz6.7 MB2018-02-27 09:331
BBMap_37.90.tar.gz6.7 MB2018-02-02 05:106
BBMap_37.89.tar.gz6.7 MB2018-02-01 08:590
BBMap_37.88.tar.gz6.7 MB2018-01-26 10:020
BBMap_37.87.tar.gz6.7 MB2018-01-24 08:221
BBMap_37.86.tar.gz6.7 MB2018-01-19 09:080
BBMap_37.85.tar.gz6.6 MB2018-01-18 03:410
BBMap_37.82.tar.gz6.6 MB2018-01-12 09:200
BBMap_37.81.tar.gz6.6 MB2018-01-10 06:580
BBMap_37.80.tar.gz6.6 MB2018-01-09 09:140
BBMap_37.78.tar.gz6.6 MB2018-01-04 07:450
BBMap_37.77.tar.gz6.6 MB2017-12-21 10:230
BBMap_37.76.tar.gz6.5 MB2017-12-12 09:470
BBMap_37.75.tar.gz6.5 MB2017-12-08 10:041
BBMap_37.73.tar.gz6.5 MB2017-12-07 09:591
BBMap_37.72.tar.gz6.4 MB2017-12-06 09:110
BBMap_37.68.tar.gz6.6 MB2017-11-23 05:390
BBMap_37.67.tar.gz6.5 MB2017-11-21 09:220
BBMap_37.66.tar.gz6.4 MB2017-11-03 09:030
BBMap_37.64.tar.gz6.4 MB2017-10-31 03:560
BBMap_37.62.tar.gz6.3 MB2017-10-25 06:190
BBMap_37.61.tar.gz6.3 MB2017-10-20 09:131
BBMap_37.60.tar.gz6.3 MB2017-10-18 07:371
BBMap_37.58.tar.gz6.3 MB2017-10-13 09:131
BBMap_37.57.tar.gz6.3 MB2017-10-05 07:491
BBMap_37.56.tar.gz6.3 MB2017-09-29 08:530
BBMap_37.55.tar.gz6.3 MB2017-09-22 09:012
BBMap_37.54.tar.gz6.3 MB2017-09-20 07:340
readme.txt2.8 KB2017-09-20 07:348
BBMap_37.53.tar.gz6.3 MB2017-09-15 07:010
BBMap_37.52.tar.gz6.3 MB2017-09-12 08:450
BBMap_37.50.tar.gz6.3 MB2017-08-29 03:251
BBMap_37.48.tar.gz6.3 MB2017-08-18 05:511
BBMap_37.44.tar.gz6.3 MB2017-08-16 09:450
BBMap_37.41.tar.gz6.2 MB2017-08-08 07:310
BBMap_37.36.tar.gz6.1 MB2017-07-11 09:022
BBMap_37.34.tar.gz6.0 MB2017-07-07 05:041
BBMap_37.33.tar.gz6.0 MB2017-06-28 07:431
BBMap_37.32.tar.gz6.0 MB2017-06-22 09:042
BBMap_37.31.tar.gz6.0 MB2017-06-16 09:332
BBMap_37.28.tar.gz6.0 MB2017-06-02 06:490
BBMap_37.25.tar.gz6.0 MB2017-05-24 07:333
BBMap_37.24.tar.gz5.9 MB2017-05-19 03:591
BBMap_37.23.tar.gz5.9 MB2017-05-12 08:490
BBMap_37.22.tar.gz5.9 MB2017-05-06 08:100
BBMap_37.17.tar.gz5.8 MB2017-04-27 05:170
BBMap_37.10.tar.gz5.6 MB2017-04-14 03:483
BBMap_37.09.tar.gz5.6 MB2017-04-08 04:270
BBMap_37.02.tar.gz5.2 MB2017-03-15 02:471
BBMap_37.00.tar.gz5.2 MB2017-03-01 03:551
BBMap_36.99.tar.gz5.2 MB2017-02-28 10:031
BBMap_36.92.tar.gz5.2 MB2017-02-03 10:330
BBMap_36.86.tar.gz5.2 MB2017-01-21 08:321
BBMap_36.85.tar.gz5.2 MB2017-01-19 03:451
BBMap_36.84.tar.gz5.1 MB2017-01-06 10:360
BBMap_36.83.tar.gz5.1 MB2017-01-06 07:260
BBMap_36.77.tar.gz5.1 MB2016-12-23 05:502
BBMap_36.76.tar.gz5.1 MB2016-12-22 08:151
BBMap_36.73.tar.gz5.1 MB2016-12-20 04:301
BBMap_36.67.tar.gz5.0 MB2016-12-06 08:190
BBMap_36.64.tar.gz5.0 MB2016-12-03 03:421
BBMap_36.62.tar.gz5.0 MB2016-11-23 10:251
BBMap_36.59.tar.gz5.0 MB2016-11-09 08:150
BBMap_36.49.tar.gz4.8 MB2016-10-15 08:390
BBMap_36.47.tar.gz4.8 MB2016-10-13 07:350
BBMap_36.38.tar.gz4.8 MB2016-09-29 08:140
BBMap_36.32.tar.gz4.7 MB2016-09-15 09:100
BBMap_36.30.tar.gz4.7 MB2016-09-02 10:441
BBMap_36.28.tar.gz4.6 MB2016-08-25 08:311
BBMap_36.27.tar.gz4.6 MB2016-08-19 06:221
BBMap_36.20.tar.gz4.6 MB2016-07-16 09:214
BBMap_36.14.tar.gz4.6 MB2016-07-07 03:454
BBMap_36.11.tar.gz4.5 MB2016-06-15 09:281
BBMap_36.02.tar.gz4.4 MB2016-05-28 07:491
BBMap_35.92.tar.gz4.4 MB2016-05-04 08:021
BBMap_35.85.tar.gz4.4 MB2016-02-29 04:371
BBMap_35.84.tar.gz4.4 MB2016-02-22 08:083
BBMap_35.82.tar.gz4.4 MB2015-12-24 07:554
BBMap_35.80.tar.gz4.4 MB2015-12-19 10:063
BBMap_35.76.tar.gz4.3 MB2015-12-11 04:552
BBMap_35.74.tar.gz4.3 MB2015-12-02 08:274
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BBMap_35.59.tar.gz4.2 MB2015-10-24 06:134
BBMap_35.51.tar.gz4.2 MB2015-10-10 07:226
BBMap_35.50.tar.gz4.2 MB2015-10-03 08:246
BBMap_35.49.tar.gz4.2 MB2015-09-29 02:509
BBMap_35.43.tar.gz4.2 MB2015-09-05 06:4610
BBMap_35.40.tar.gz4.2 MB2015-08-28 08:0010
BBMap_35.38.tar.gz4.2 MB2015-08-26 08:589
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BBMap_35.34.tar.gz4.1 MB2015-08-15 07:459
BBMap_35.32.tar.gz4.1 MB2015-08-13 08:048
BBMap_35.31.tar.gz4.1 MB2015-08-12 08:457
BBMap_35.29.tar.gz4.1 MB2015-08-11 09:3210
BBMap_35.28.tar.gz4.1 MB2015-08-11 03:486
BBMap_35.24.tar.gz4.1 MB2015-08-01 07:228
BBMap_35.14.tar.gz4.0 MB2015-07-07 10:0012
BBMap_35.10.tar.gz3.9 MB2015-06-20 09:466
BBMap_35.07.tar.gz3.9 MB2015-06-13 03:286
BBMap_35.02.tar.gz3.9 MB2015-06-05 09:248
BBMap_34.97.tar.gz3.9 MB2015-05-27 07:249
BBMap_34.94.tar.gz3.8 MB2015-05-13 09:068
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BBMap_34.41.tar.gz3.7 MB2015-01-30 09:468
BBMap_34.38.tar.gz3.6 MB2015-01-24 03:187
BBMap_34.33.tar.gz3.6 MB2015-01-14 10:1914
BBMap_34.30.tar.gz3.6 MB2015-01-11 05:227
BBMap_34.27_java7.tar.gz3.6 MB2015-01-10 04:248
BBMap_34.26_java6.tar.gz3.6 MB2015-01-09 09:426
BBMap_34.26_java7.tar.gz3.6 MB2015-01-09 09:4219
BBMap_34.25_java6.tar.gz3.6 MB2015-01-08 04:116
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BBMap_34.24_java6.tar.gz3.6 MB2015-01-07 08:175
BBMap_34.24_java7.tar.gz3.6 MB2015-01-07 08:178
BBMap_34.23_java7.tar.gz3.6 MB2015-01-06 03:354
BBMap_34.23_java6.tar.gz3.6 MB2015-01-06 03:348
BBMap_34.22_java6.tar.gz3.6 MB2014-12-30 10:176
BBMap_34.22_java7.tar.gz3.6 MB2014-12-30 10:178
BBMap_34.19_java7.tar.gz3.6 MB2014-12-19 11:0912
BBMap_34.08_java7.tar.gz3.6 MB2014-12-09 09:1812
BBMap_34.00_java7.tar.gz3.7 MB2014-11-25 11:329
BBMap_33.95_java7.tar.gz3.6 MB2014-11-22 07:278
BBMap_33.92_java7.tar.gz3.6 MB2014-11-15 09:0015
BBMap_33.89b_java6.tar.gz3.6 MB2014-11-12 08:0610
BBMap_33.89_java7.tar.gz3.6 MB2014-11-12 01:548
BBMap_33.73b_java7.tar.gz3.5 MB2014-10-28 06:508
BBMap_33.69_java7.tar.gz3.5 MB2014-10-24 04:0811
BBMap_33.65_java7.tar.gz3.5 MB2014-10-15 09:3411
BBMap_33.57_java7.tar.gz3.4 MB2014-10-07 02:096
BBMap_33.54_java7.tar.gz3.4 MB2014-10-02 06:365
BBMap_33.51_java7.tar.gz3.4 MB2014-09-27 08:4212
BBMap_33.46_java7.tar.gz3.4 MB2014-09-23 08:535
BBMap_33.44_java7.tar.gz3.4 MB2014-09-19 01:2111
BBMap_33.43_java7.tar.gz3.4 MB2014-09-18 07:426
BBMap_33.41_java7.tar.gz3.4 MB2014-09-13 06:258
BBMap_33.40b_java7.tar.gz3.4 MB2014-09-05 02:276
BBMap_33.34_java7.tar.gz3.4 MB2014-09-03 03:1914
BBMap_33.21_java7.tar.gz3.3 MB2014-08-02 05:345
BBMap_33.13_java7.tar.gz3.3 MB2014-07-23 04:156
BBMap_33.08_java7.tar.gz3.3 MB2014-07-10 08:4014
BBMap_33.04_java7.tar.gz3.2 MB2014-06-28 08:2516
BBMap_32.32_java6.tar.gz3.2 MB2014-06-18 09:178
BBMap_32.32_java7.tar.gz3.2 MB2014-06-18 09:175
BBMap_32.27_java6.tar.gz3.2 MB2014-06-04 05:277
BBMap_32.27_java7.tar.gz3.2 MB2014-06-04 05:279
BBMap_32.23_java6.tar.gz3.2 MB2014-05-22 01:136
BBMap_32.23_java7.tar.gz3.2 MB2014-05-22 01:138
BBMap_32.15_java6.tar.gz3.1 MB2014-04-26 07:198
BBMap_32.15_java7.tar.gz3.1 MB2014-04-26 07:194
BBMap_32.14_java6.tar.gz3.1 MB2014-04-24 09:033
BBMap_32.14_java7.tar.gz3.1 MB2014-04-24 09:037
BBMap_32.07_java7.tar.gz3.1 MB2014-04-24 08:599
BBMap_32.07_java6.tar.gz3.0 MB2014-04-18 01:368
BBMap_31.56_java6.tar.gz2.9 MB2014-04-04 03:064
BBMap_31.56_java7.tar.gz2.9 MB2014-04-04 03:057
BBMap_31.40_java6.tar.gz2.9 MB2014-03-15 03:369
BBMap_31.40_java7.tar.gz2.9 MB2014-03-15 03:3610
BBMap_31.32_java7.tar.gz2.9 MB2014-02-26 09:557
BBMap_31.32_java6.tar.gz2.9 MB2014-02-26 09:455
BBMap.tar.gz2.9 MB2014-02-20 05:4781