The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to our open mzXML format.
Open source project that offer summary and download services on this page is a project that carry out their development work on other open source development sites. Their work is linked to this page via a feature called OFI, and their work is not carried out here on OSDN site.